{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [],
   "source": [
    "from sklearn.datasets import load_breast_cancer\n",
    "from genetic_selection import GeneticSelectionCV\n",
    "from sklearn.tree import DecisionTreeClassifier\n",
    "import pandas as pd\n",
    "import numpy as np"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>mean radius</th>\n",
       "      <th>mean texture</th>\n",
       "      <th>mean perimeter</th>\n",
       "      <th>mean area</th>\n",
       "      <th>mean smoothness</th>\n",
       "      <th>mean compactness</th>\n",
       "      <th>mean concavity</th>\n",
       "      <th>mean concave points</th>\n",
       "      <th>mean symmetry</th>\n",
       "      <th>mean fractal dimension</th>\n",
       "      <th>...</th>\n",
       "      <th>worst radius</th>\n",
       "      <th>worst texture</th>\n",
       "      <th>worst perimeter</th>\n",
       "      <th>worst area</th>\n",
       "      <th>worst smoothness</th>\n",
       "      <th>worst compactness</th>\n",
       "      <th>worst concavity</th>\n",
       "      <th>worst concave points</th>\n",
       "      <th>worst symmetry</th>\n",
       "      <th>worst fractal dimension</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>17.99</td>\n",
       "      <td>10.38</td>\n",
       "      <td>122.80</td>\n",
       "      <td>1001.0</td>\n",
       "      <td>0.11840</td>\n",
       "      <td>0.27760</td>\n",
       "      <td>0.3001</td>\n",
       "      <td>0.14710</td>\n",
       "      <td>0.2419</td>\n",
       "      <td>0.07871</td>\n",
       "      <td>...</td>\n",
       "      <td>25.38</td>\n",
       "      <td>17.33</td>\n",
       "      <td>184.60</td>\n",
       "      <td>2019.0</td>\n",
       "      <td>0.1622</td>\n",
       "      <td>0.6656</td>\n",
       "      <td>0.7119</td>\n",
       "      <td>0.2654</td>\n",
       "      <td>0.4601</td>\n",
       "      <td>0.11890</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>20.57</td>\n",
       "      <td>17.77</td>\n",
       "      <td>132.90</td>\n",
       "      <td>1326.0</td>\n",
       "      <td>0.08474</td>\n",
       "      <td>0.07864</td>\n",
       "      <td>0.0869</td>\n",
       "      <td>0.07017</td>\n",
       "      <td>0.1812</td>\n",
       "      <td>0.05667</td>\n",
       "      <td>...</td>\n",
       "      <td>24.99</td>\n",
       "      <td>23.41</td>\n",
       "      <td>158.80</td>\n",
       "      <td>1956.0</td>\n",
       "      <td>0.1238</td>\n",
       "      <td>0.1866</td>\n",
       "      <td>0.2416</td>\n",
       "      <td>0.1860</td>\n",
       "      <td>0.2750</td>\n",
       "      <td>0.08902</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>19.69</td>\n",
       "      <td>21.25</td>\n",
       "      <td>130.00</td>\n",
       "      <td>1203.0</td>\n",
       "      <td>0.10960</td>\n",
       "      <td>0.15990</td>\n",
       "      <td>0.1974</td>\n",
       "      <td>0.12790</td>\n",
       "      <td>0.2069</td>\n",
       "      <td>0.05999</td>\n",
       "      <td>...</td>\n",
       "      <td>23.57</td>\n",
       "      <td>25.53</td>\n",
       "      <td>152.50</td>\n",
       "      <td>1709.0</td>\n",
       "      <td>0.1444</td>\n",
       "      <td>0.4245</td>\n",
       "      <td>0.4504</td>\n",
       "      <td>0.2430</td>\n",
       "      <td>0.3613</td>\n",
       "      <td>0.08758</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>11.42</td>\n",
       "      <td>20.38</td>\n",
       "      <td>77.58</td>\n",
       "      <td>386.1</td>\n",
       "      <td>0.14250</td>\n",
       "      <td>0.28390</td>\n",
       "      <td>0.2414</td>\n",
       "      <td>0.10520</td>\n",
       "      <td>0.2597</td>\n",
       "      <td>0.09744</td>\n",
       "      <td>...</td>\n",
       "      <td>14.91</td>\n",
       "      <td>26.50</td>\n",
       "      <td>98.87</td>\n",
       "      <td>567.7</td>\n",
       "      <td>0.2098</td>\n",
       "      <td>0.8663</td>\n",
       "      <td>0.6869</td>\n",
       "      <td>0.2575</td>\n",
       "      <td>0.6638</td>\n",
       "      <td>0.17300</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>20.29</td>\n",
       "      <td>14.34</td>\n",
       "      <td>135.10</td>\n",
       "      <td>1297.0</td>\n",
       "      <td>0.10030</td>\n",
       "      <td>0.13280</td>\n",
       "      <td>0.1980</td>\n",
       "      <td>0.10430</td>\n",
       "      <td>0.1809</td>\n",
       "      <td>0.05883</td>\n",
       "      <td>...</td>\n",
       "      <td>22.54</td>\n",
       "      <td>16.67</td>\n",
       "      <td>152.20</td>\n",
       "      <td>1575.0</td>\n",
       "      <td>0.1374</td>\n",
       "      <td>0.2050</td>\n",
       "      <td>0.4000</td>\n",
       "      <td>0.1625</td>\n",
       "      <td>0.2364</td>\n",
       "      <td>0.07678</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>5 rows × 30 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "   mean radius  mean texture  mean perimeter  mean area  mean smoothness  \\\n",
       "0        17.99         10.38          122.80     1001.0          0.11840   \n",
       "1        20.57         17.77          132.90     1326.0          0.08474   \n",
       "2        19.69         21.25          130.00     1203.0          0.10960   \n",
       "3        11.42         20.38           77.58      386.1          0.14250   \n",
       "4        20.29         14.34          135.10     1297.0          0.10030   \n",
       "\n",
       "   mean compactness  mean concavity  mean concave points  mean symmetry  \\\n",
       "0           0.27760          0.3001              0.14710         0.2419   \n",
       "1           0.07864          0.0869              0.07017         0.1812   \n",
       "2           0.15990          0.1974              0.12790         0.2069   \n",
       "3           0.28390          0.2414              0.10520         0.2597   \n",
       "4           0.13280          0.1980              0.10430         0.1809   \n",
       "\n",
       "   mean fractal dimension  ...  worst radius  worst texture  worst perimeter  \\\n",
       "0                 0.07871  ...         25.38          17.33           184.60   \n",
       "1                 0.05667  ...         24.99          23.41           158.80   \n",
       "2                 0.05999  ...         23.57          25.53           152.50   \n",
       "3                 0.09744  ...         14.91          26.50            98.87   \n",
       "4                 0.05883  ...         22.54          16.67           152.20   \n",
       "\n",
       "   worst area  worst smoothness  worst compactness  worst concavity  \\\n",
       "0      2019.0            0.1622             0.6656           0.7119   \n",
       "1      1956.0            0.1238             0.1866           0.2416   \n",
       "2      1709.0            0.1444             0.4245           0.4504   \n",
       "3       567.7            0.2098             0.8663           0.6869   \n",
       "4      1575.0            0.1374             0.2050           0.4000   \n",
       "\n",
       "   worst concave points  worst symmetry  worst fractal dimension  \n",
       "0                0.2654          0.4601                  0.11890  \n",
       "1                0.1860          0.2750                  0.08902  \n",
       "2                0.2430          0.3613                  0.08758  \n",
       "3                0.2575          0.6638                  0.17300  \n",
       "4                0.1625          0.2364                  0.07678  \n",
       "\n",
       "[5 rows x 30 columns]"
      ]
     },
     "execution_count": 8,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "\n",
    "data = load_breast_cancer()\n",
    "df = pd.DataFrame(data.data, columns=data.feature_names)\n",
    "df.head()\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Features: Index(['mean concavity', 'mean concave points', 'worst texture', 'worst area',\n",
      "       'worst fractal dimension'],\n",
      "      dtype='object')\n"
     ]
    },
    {
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       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>mean concavity</th>\n",
       "      <th>mean concave points</th>\n",
       "      <th>worst texture</th>\n",
       "      <th>worst area</th>\n",
       "      <th>worst fractal dimension</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>0.3001</td>\n",
       "      <td>0.14710</td>\n",
       "      <td>17.33</td>\n",
       "      <td>2019.0</td>\n",
       "      <td>0.11890</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>0.0869</td>\n",
       "      <td>0.07017</td>\n",
       "      <td>23.41</td>\n",
       "      <td>1956.0</td>\n",
       "      <td>0.08902</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>0.1974</td>\n",
       "      <td>0.12790</td>\n",
       "      <td>25.53</td>\n",
       "      <td>1709.0</td>\n",
       "      <td>0.08758</td>\n",
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       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>0.2414</td>\n",
       "      <td>0.10520</td>\n",
       "      <td>26.50</td>\n",
       "      <td>567.7</td>\n",
       "      <td>0.17300</td>\n",
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       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>0.1980</td>\n",
       "      <td>0.10430</td>\n",
       "      <td>16.67</td>\n",
       "      <td>1575.0</td>\n",
       "      <td>0.07678</td>\n",
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      ],
      "text/plain": [
       "   mean concavity  mean concave points  worst texture  worst area  \\\n",
       "0          0.3001              0.14710          17.33      2019.0   \n",
       "1          0.0869              0.07017          23.41      1956.0   \n",
       "2          0.1974              0.12790          25.53      1709.0   \n",
       "3          0.2414              0.10520          26.50       567.7   \n",
       "4          0.1980              0.10430          16.67      1575.0   \n",
       "\n",
       "   worst fractal dimension  \n",
       "0                  0.11890  \n",
       "1                  0.08902  \n",
       "2                  0.08758  \n",
       "3                  0.17300  \n",
       "4                  0.07678  "
      ]
     },
     "execution_count": 9,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "df['target'] = data.target\n",
    "X = df.drop(['target'], axis=1)\n",
    "y = df['target'].astype(float)\n",
    "estimator = DecisionTreeClassifier()\n",
    "model = GeneticSelectionCV(\n",
    "    estimator, cv=5, verbose=0,\n",
    "    scoring=\"accuracy\", max_features=5,\n",
    "    n_population=100, crossover_proba=0.5,\n",
    "    mutation_proba=0.2, n_generations=50,\n",
    "    crossover_independent_proba=0.5,\n",
    "    mutation_independent_proba=0.04,\n",
    "    tournament_size=3, n_gen_no_change=10,\n",
    "    caching=True, n_jobs=-1)\n",
    "model = model.fit(X, y)\n",
    "print('Features:', X.columns[model.support_])\n",
    "\n",
    "df[X.columns[model.support_]].head()"
   ]
  }
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